SUGP2 protein (Phascolarctos cinereus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SUGP2

SURP and G-patch domain-containing protein 2. (1112 aa)

Predicted Functional Partners:

GIN1

0.709

U2AF2

0.702

UBXN8

0.606

ENSPCIP00000026701

0.605

ENSPCIP00000049852

0.605

ENSPCIP00000025014

0.589

ZRANB1

0.588

TRIM28

0.588

DHX9

0.585

ENSPCIP00000013648

0.569

Your Current Organism:

Phascolarctos cinereus

NCBI taxonomy Id: 38626
Other names: P. cinereus, koala

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX9	ENSPCIP00000026701	ENSPCIP00000004477	ENSPCIP00000026701	ATP-dependent RNA helicase A isoform X1.	annotation not available	0.905
DHX9	ENSPCIP00000049852	ENSPCIP00000004477	ENSPCIP00000049852	ATP-dependent RNA helicase A isoform X1.	annotation not available	0.905
DHX9	SUGP2	ENSPCIP00000004477	ENSPCIP00000001180	ATP-dependent RNA helicase A isoform X1.	SURP and G-patch domain-containing protein 2.	0.585
DHX9	TRIM28	ENSPCIP00000004477	ENSPCIP00000036298	ATP-dependent RNA helicase A isoform X1.	Tripartite motif containing 28.	0.634
DHX9	U2AF2	ENSPCIP00000004477	ENSPCIP00000023819	ATP-dependent RNA helicase A isoform X1.	Splicing factor U2AF 65 kDa subunit isoform X1.	0.701
ENSPCIP00000013648	SUGP2	ENSPCIP00000013648	ENSPCIP00000001180	annotation not available	SURP and G-patch domain-containing protein 2.	0.569
ENSPCIP00000013648	U2AF2	ENSPCIP00000013648	ENSPCIP00000023819	annotation not available	Splicing factor U2AF 65 kDa subunit isoform X1.	0.583
ENSPCIP00000025014	SUGP2	ENSPCIP00000025014	ENSPCIP00000001180	Uncharacterized protein LOC110213419.	SURP and G-patch domain-containing protein 2.	0.589
ENSPCIP00000026701	DHX9	ENSPCIP00000026701	ENSPCIP00000004477	annotation not available	ATP-dependent RNA helicase A isoform X1.	0.905
ENSPCIP00000026701	SUGP2	ENSPCIP00000026701	ENSPCIP00000001180	annotation not available	SURP and G-patch domain-containing protein 2.	0.605
ENSPCIP00000026701	U2AF2	ENSPCIP00000026701	ENSPCIP00000023819	annotation not available	Splicing factor U2AF 65 kDa subunit isoform X1.	0.789
ENSPCIP00000049852	DHX9	ENSPCIP00000049852	ENSPCIP00000004477	annotation not available	ATP-dependent RNA helicase A isoform X1.	0.905
ENSPCIP00000049852	SUGP2	ENSPCIP00000049852	ENSPCIP00000001180	annotation not available	SURP and G-patch domain-containing protein 2.	0.605
ENSPCIP00000049852	U2AF2	ENSPCIP00000049852	ENSPCIP00000023819	annotation not available	Splicing factor U2AF 65 kDa subunit isoform X1.	0.789
GIN1	SUGP2	ENSPCIP00000004038	ENSPCIP00000001180	Gypsy retrotransposon integrase-like protein 1 isoform X1.	SURP and G-patch domain-containing protein 2.	0.709
GIN1	UBXN8	ENSPCIP00000004038	ENSPCIP00000021161	Gypsy retrotransposon integrase-like protein 1 isoform X1.	UBX domain-containing protein 8.	0.632
SUGP2	DHX9	ENSPCIP00000001180	ENSPCIP00000004477	SURP and G-patch domain-containing protein 2.	ATP-dependent RNA helicase A isoform X1.	0.585
SUGP2	ENSPCIP00000013648	ENSPCIP00000001180	ENSPCIP00000013648	SURP and G-patch domain-containing protein 2.	annotation not available	0.569
SUGP2	ENSPCIP00000025014	ENSPCIP00000001180	ENSPCIP00000025014	SURP and G-patch domain-containing protein 2.	Uncharacterized protein LOC110213419.	0.589
SUGP2	ENSPCIP00000026701	ENSPCIP00000001180	ENSPCIP00000026701	SURP and G-patch domain-containing protein 2.	annotation not available	0.605