TBKBP1 protein (Phascolarctos cinereus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TBKBP1

LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1. (613 aa)

Predicted Functional Partners:

TBK1

0.965

TANK

0.889

IKBKE

0.884

CALCOCO2

0.873

AZI2

0.850

RB1CC1

0.588

AGO2

0.552

KPNB1

0.494

FXR2

0.493

CHUK

0.492

Your Current Organism:

Phascolarctos cinereus

NCBI taxonomy Id: 38626
Other names: P. cinereus, koala

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO2	FXR2	ENSPCIP00000042040	ENSPCIP00000039494	Eukaryotic translation initiation factor 2C.	Fragile X mental retardation syndrome-related protein 2.	0.726
AGO2	TBKBP1	ENSPCIP00000042040	ENSPCIP00000001239	Eukaryotic translation initiation factor 2C.	LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1.	0.552
AZI2	CALCOCO2	ENSPCIP00000006820	ENSPCIP00000013224	5-azacytidine-induced protein 2 isoform X1.	Calcium-binding and coiled-coil domain-containing protein 2.	0.922
AZI2	CHUK	ENSPCIP00000006820	ENSPCIP00000030519	5-azacytidine-induced protein 2 isoform X1.	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	0.449
AZI2	IKBKE	ENSPCIP00000006820	ENSPCIP00000001085	5-azacytidine-induced protein 2 isoform X1.	Inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1.	0.878
AZI2	TANK	ENSPCIP00000006820	ENSPCIP00000047989	5-azacytidine-induced protein 2 isoform X1.	TRAF family member-associated NF-kappa-B activator isoform X1.	0.912
AZI2	TBK1	ENSPCIP00000006820	ENSPCIP00000051115	5-azacytidine-induced protein 2 isoform X1.	Serine/threonine-protein kinase TBK1.	0.958
AZI2	TBKBP1	ENSPCIP00000006820	ENSPCIP00000001239	5-azacytidine-induced protein 2 isoform X1.	LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1.	0.850
CALCOCO2	AZI2	ENSPCIP00000013224	ENSPCIP00000006820	Calcium-binding and coiled-coil domain-containing protein 2.	5-azacytidine-induced protein 2 isoform X1.	0.922
CALCOCO2	CHUK	ENSPCIP00000013224	ENSPCIP00000030519	Calcium-binding and coiled-coil domain-containing protein 2.	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	0.460
CALCOCO2	IKBKE	ENSPCIP00000013224	ENSPCIP00000001085	Calcium-binding and coiled-coil domain-containing protein 2.	Inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1.	0.776
CALCOCO2	RB1CC1	ENSPCIP00000013224	ENSPCIP00000039743	Calcium-binding and coiled-coil domain-containing protein 2.	RB1-inducible coiled-coil protein 1 isoform X1.	0.902
CALCOCO2	TBK1	ENSPCIP00000013224	ENSPCIP00000051115	Calcium-binding and coiled-coil domain-containing protein 2.	Serine/threonine-protein kinase TBK1.	0.994
CALCOCO2	TBKBP1	ENSPCIP00000013224	ENSPCIP00000001239	Calcium-binding and coiled-coil domain-containing protein 2.	LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1.	0.873
CHUK	AZI2	ENSPCIP00000030519	ENSPCIP00000006820	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	5-azacytidine-induced protein 2 isoform X1.	0.449
CHUK	CALCOCO2	ENSPCIP00000030519	ENSPCIP00000013224	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	Calcium-binding and coiled-coil domain-containing protein 2.	0.460
CHUK	IKBKE	ENSPCIP00000030519	ENSPCIP00000001085	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	Inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1.	0.414
CHUK	TANK	ENSPCIP00000030519	ENSPCIP00000047989	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	TRAF family member-associated NF-kappa-B activator isoform X1.	0.772
CHUK	TBK1	ENSPCIP00000030519	ENSPCIP00000051115	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	Serine/threonine-protein kinase TBK1.	0.450
CHUK	TBKBP1	ENSPCIP00000030519	ENSPCIP00000001239	Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.	LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1.	0.492