Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX49LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX49. (490 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.987
WDR46
WD repeat domain 46.
   
 0.978
DHX37
LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX37.
   
 0.973
KRR1
KRR1 small subunit processome component homolog.
   
 0.965
UTP25
U3 small nucleolar RNA-associated protein 25.
   
 0.965
BYSL
Essential nuclear protein 1.
   
 
 0.961
UTP11
Probable U3 small nucleolar RNA-associated protein 11.
   
 0.953
DDX47
Probable ATP-dependent RNA helicase DDX47.
   
 0.951
PDCD11
RRNA biogenesis protein RRP5.
   
 0.950
DCAF13
DDB1- and CUL4-associated factor 13.
   
 0.945
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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