STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX49LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX49. (490 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.995
ABT1
Activator of basal transcription 1.
   
 
 0.984
WDR46
WD repeat domain 46.
   
 0.979
UTP25
U3 small nucleolar RNA-associated protein 25.
   
 
 0.977
EMG1
Ribosomal RNA small subunit methyltransferase NEP1 isoform X1.
   
 0.969
PDCD11
RRNA biogenesis protein RRP5.
   
 0.968
BYSL
Essential nuclear protein 1.
   
 
 0.961
KRR1
KRR1 small subunit processome component homolog.
   
 0.958
NOC4L
U3 small nucleolar RNA-associated protein 19.
   
 0.957
DDX47
Probable ATP-dependent RNA helicase DDX47.
  
 
0.955
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.