Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APIPMethylthioribulose-1-phosphate dehydratase isoform X1. (242 aa)    
Predicted Functional Partners:
ENOPH1
Enolase-phosphatase E1 isoform X1.
 
 0.997
MRI1
Methylthioribose-1-phosphate isomerase isoform X1.
 
 
 0.985
ADI1
Acireductone dioxygenase 1.
  
 0.901
APAF1
LOW QUALITY PROTEIN: apoptotic protease-activating factor 1.
   
 0.824
MTAP
S-methyl-5'-thioadenosine phosphorylase.
  
 
 0.703
CASP9
Caspase 9.
     
 0.698
ENSPCIP00000000823
annotation not available
  
 
 0.642
XYLB
Xylulose kinase isoform X1.
  
 
 0.642
TPI1
Triosephosphate isomerase (TIM).
    
 0.609
NUDT18
8-oxo-dGDP phosphatase NUDT18 isoform X1.
    
   0.578
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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