Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL4539S ribosomal protein L45, mitochondrial. (317 aa)    
Predicted Functional Partners:
MRPL37
39S ribosomal protein L37, mitochondrial.
   
 
 0.963
MRPL15
39S ribosomal protein L15, mitochondrial.
   
   0.957
MRPL49
39S ribosomal protein L49, mitochondrial isoform X1.
   
 
 0.938
MRPL46
39S ribosomal protein L46, mitochondrial.
   
 
 0.937
MRPL39
39S ribosomal protein L39, mitochondrial.
   
 
 0.934
MRPL48
39S ribosomal protein L48, mitochondrial.
   
 
 0.934
MRPL40
39S ribosomal protein L40, mitochondrial.
   
 
 0.925
MRPL16
39S ribosomal protein L16, mitochondrial.
   
 
 0.919
MRPL50
Mitochondrial ribosomal protein L50.
   
 
 0.918
MALSU1
Mitochondrial assembly of ribosomal large subunit protein 1 isoform X1.
    
 0.915
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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