STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD11RRNA biogenesis protein RRP5. (1873 aa)    
Predicted Functional Partners:
UTP20
LOW QUALITY PROTEIN: small subunit processome component 20 homolog.
   
 0.998
NOP14
Nucleolar protein 14.
   
 0.997
WDR46
WD repeat domain 46.
   
 0.997
KRR1
KRR1 small subunit processome component homolog.
   
 0.996
HEATR1
U3 small nucleolar RNA-associated protein 10.
   
 0.994
UTP4
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.993
NOC4L
U3 small nucleolar RNA-associated protein 19.
   
 0.992
DCAF13
DDB1- and CUL4-associated factor 13.
   
 0.990
WDR75
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).
   
 0.989
EMG1
Ribosomal RNA small subunit methyltransferase NEP1 isoform X1.
   
 0.988
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.