STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATE1Arginyl-tRNA--protein transferase 1 isoform X1. (565 aa)    
Predicted Functional Partners:
ENSPCIP00000029331
annotation not available
      
 0.704
TRPC6
Transient receptor potential cation channel subfamily C member 6.
      
 0.616
GPR158
Probable G-protein coupled receptor 158.
      
 0.614
VPS26B
Vacuolar protein sorting-associated protein 26B.
    
   0.589
UBR1
E3 ubiquitin-protein ligase UBR1 isoform X1.
   
 
 0.584
SPCS2
Signal peptidase complex subunit 2.
      
 0.577
NTAN1
LOW QUALITY PROTEIN: protein N-terminal asparagine amidohydrolase.
    
 
 0.572
CA14
Carbonic anhydrase 14.
      
 0.556
TMEM45B
Transmembrane protein 45B isoform X1.
      
 0.553
POU2AF1
POU domain class 2-associating factor 1.
    
   0.553
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.