Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS1LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog. (1275 aa)    
Predicted Functional Partners:
RCL1
LOW QUALITY PROTEIN: RNA 3'-terminal phosphate cyclase-like protein.
   
 0.998
HEATR1
U3 small nucleolar RNA-associated protein 10.
   
 0.996
UTP4
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.996
UTP18
U3 small nucleolar RNA-associated protein 18 homolog isoform X1.
   
 0.995
WDR36
LOW QUALITY PROTEIN: WD repeat-containing protein 36.
   
 0.993
UTP20
LOW QUALITY PROTEIN: small subunit processome component 20 homolog.
   
 0.992
NOP14
Nucleolar protein 14.
   
 0.992
WDR3
U3 small nucleolar RNA-associated protein 12.
   
 0.991
WDR43
WD repeat domain 43.
   
 0.991
PWP2
Periodic tryptophan protein 2 homolog.
   
 0.991
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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