Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EMX2LOW QUALITY PROTEIN: homeobox protein EMX2. (248 aa)    
Predicted Functional Partners:
FOXG1
LOW QUALITY PROTEIN: forkhead box protein G1.
   
 0.791
POLB
DNA polymerase beta isoform X1.
    
   0.698
LHX5
LIM/homeobox protein Lhx5.
    
 0.658
GPR156
Gamma-aminobutyric acid type B receptor-like.
      
 0.616
TBR1
T-box brain protein 1.
    
 0.616
GATA5
Transcription factor GATA-5 isoform X1.
     
 0.614
CTNNB1
LOW QUALITY PROTEIN: catenin beta-1.
     
 0.591
XRCC6
X-ray repair cross-complementing protein 6 isoform X1.
    
   0.589
LHX1
LIM/homeobox protein Lhx1.
    
 0.573
RET
Proto-oncogene tyrosine-protein kinase receptor Ret isoform X1.
     
 0.565
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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