STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNRTenascin-R isoform X1. (1358 aa)    
Predicted Functional Partners:
ITGA9
Integrin alpha 9.
    
 0.945
ITGB6
Integrin beta 6.
   
0.945
ITGAV
Integrin alpha V.
    
 0.942
ITGA8
Integrin alpha-8 isoform X1.
    
 0.942
TNN
Tenascin N.
     
0.938
ITGB1
Integrin beta-1 isoform X1.
   
0.937
ITGB3
Integrin beta 3.
   
0.937
TNXB
Tenascin-X isoform X1.
     
 
0.928
PTPRZ1
LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase zeta.
   
 0.915
SDC4
Syndecan 4.
     
 0.900
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.