Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FERMT1Fermitin family homolog 1. (677 aa)    
Predicted Functional Partners:
FBLIM1
LOW QUALITY PROTEIN: filamin-binding LIM protein 1.
    
 0.945
ILK
Integrin-linked protein kinase.
   
 
 0.886
FERMT3
Fermitin family homolog 3.
    
   0.844
FERMT2
Fermitin family homolog 2 isoform X1.
    
   0.831
ITGB8
Integrin beta-8 isoform X1.
   
 0.692
VCL
Vinculin isoform X1.
   
 
 0.678
ITGB3
Integrin beta 3.
   
 0.674
ITGB7
LOW QUALITY PROTEIN: integrin beta-7.
   
 0.649
ITGB5
Integrin beta 5.
   
 0.639
LIMS2
LIM and senescent cell antigen-like-containing domain protein 2 isoform X1.
   
 
 0.639
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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