STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain protein 1/2/3/4. (328 aa)    
Predicted Functional Partners:
ACTN2
Alpha-actinin-2 isoform X1.
   
 
 0.633
STK35
Serine/threonine-protein kinase 35 isoform X1.
    
 
 0.603
PDLIM5
LOW QUALITY PROTEIN: PDZ and LIM domain protein 5.
 
 
  
 0.598
SH3RF3
SH3 domain-containing RING finger protein 3 isoform X1.
    
 0.589
ACTN1
Alpha-actinin-1 isoform X1.
   
 
 0.585
ACTN4
Alpha-actinin-4 isoform X1.
   
 
 0.585
PTK2B
Protein tyrosine kinase 2 beta.
    
 0.564
PTK2
Focal adhesion kinase 1 isoform X1.
    
 0.564
COL1A2
Collagen alpha-2(I) chain.
      
 0.510
VCL
Vinculin isoform X1.
   
 0.492
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.