Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain protein 1/2/3/4. (328 aa)    
Predicted Functional Partners:
ACTN2
Alpha-actinin-2 isoform X1.
   
 
 0.904
PDLIM4
PDZ and LIM domain protein 4 isoform X1.
  
  
 
0.901
PDLIM2
PDZ and LIM domain protein 1/2/3/4.
     
0.900
ACTN1
Alpha-actinin-1 isoform X1.
   
 
 0.805
ACTN4
Alpha-actinin-4 isoform X1.
   
 
 0.805
PDLIM5
LOW QUALITY PROTEIN: PDZ and LIM domain protein 5.
 
 
 
 0.800
ENSPCIP00000019710
annotation not available
   
 
 0.781
STK35
Serine/threonine-protein kinase 35 isoform X1.
    
 
 0.754
HELLS
Lymphoid-specific helicase-like.
      
 0.700
ACTN3
Alpha-actinin-3 isoform X1.
   
 
 0.672
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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