STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP28Matrix metallopeptidase 28. (518 aa)    
Predicted Functional Partners:
TIMP4
Metalloproteinase inhibitor 4.
   
 0.527
HPX
Hemopexin.
      
 0.515
TIMP2
Metalloproteinase inhibitor 2.
   
 0.453
TIMP1
Metalloproteinase inhibitor 1.
   
 0.448
TIMP3
Metalloproteinase inhibitor 3.
   
 0.447
ARMC6
Armadillo repeat-containing protein 6 isoform X1.
      
 0.412
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.