Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RNF130E3 ubiquitin-protein ligase RNF130 isoform X1. (439 aa)    
Predicted Functional Partners:
CGRRF1
Cell growth regulator with RING finger domain protein 1 isoform X1.
     
 0.499
RNF145
RING finger protein 145.
    
 
 0.488
RNF144A
E3 ubiquitin-protein ligase RNF144A isoform X1.
     
 0.482
RNF223
RING finger protein 223 isoform X1.
    
 0.481
RNF183
E3 ubiquitin-protein ligase RNF183.
    
 0.480
OCIAD2
OCIA domain-containing protein 2 isoform X1.
      
 0.468
TMEM129
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TM129.
      
 0.463
UBXN7
UBX domain-containing protein 7.
   
   0.462
CPEB3
Cytoplasmic polyadenylation element-binding protein 3 isoform X1.
   
  
 0.413
SEC63
Translocation protein SEC63 homolog.
    
 
 0.404
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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