STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP9Matrix metalloproteinase-9 (gelatinase B). (713 aa)    
Predicted Functional Partners:
TIMP3
Metalloproteinase inhibitor 3.
   
 0.986
THBS1
Thrombospondin 1.
   
 0.973
MMP1
Matrix metalloproteinase-1 (interstitial collagenase).
  
0.961
MMP3
Matrix metalloproteinase-3 (stromelysin 1, progelatinase).
  
0.946
MMP2
Matrix metalloproteinase-2 (gelatinase A).
  
0.939
SDC1
Syndecan-1 isoform X1.
    
 0.939
EDN1
Endothelin-1.
     
 0.932
SRC
Proto-oncogene tyrosine-protein kinase Src isoform X1.
   
 0.932
CYBA
Cytochrome b-245 light chain isoform X1.
     
 0.930
HBEGF
Proheparin-binding EGF-like growth factor.
    
 0.930
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.