STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABGEF1Rab5 GDP/GTP exchange factor isoform X1. (491 aa)    
Predicted Functional Partners:
RABEP2
Rab GTPase-binding effector protein 2 isoform X1.
   
 0.999
RABEP1
Rab GTPase-binding effector protein 1 isoform X1.
   
 0.999
RAB21
Ras-related protein Rab-21.
   
 0.997
RAB22A
Ras-related protein Rab-22A.
   
 0.979
RAB24
Ras-related protein Rab-24 isoform X1.
   
 0.969
RAB5A
Ras-related protein Rab-5A.
   
 0.969
RAB5C
Ras-related protein Rab-5C.
   
 0.969
ZHX2
Zinc fingers and homeoboxes protein 2 isoform X1.
   
 0.969
RAB17
Ras-related protein Rab-17.
   
 0.969
RAB5B
Ras-related protein Rab-5B.
   
 0.969
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.