ABCB8 protein (Phascolarctos cinereus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCB8

ATP-binding cassette sub-family B member 8, mitochondrial. (752 aa)

Predicted Functional Partners:

ABCB7

0.719

CCDC51

0.617

TDG

0.506

KATNAL2

0.496

SLC25A28

0.468

KCNJ1

0.437

FECH

0.430

CDH12

0.425

MCU

0.405

SLC25A37

0.402

Your Current Organism:

Phascolarctos cinereus

NCBI taxonomy Id: 38626
Other names: P. cinereus, koala

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB7	ABCB8	ENSPCIP00000022583	ENSPCIP00000007254	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	ATP-binding cassette sub-family B member 8, mitochondrial.	0.719
ABCB7	FECH	ENSPCIP00000022583	ENSPCIP00000027007	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	Protoporphyrin/coproporphyrin ferrochelatase.	0.697
ABCB7	SLC25A28	ENSPCIP00000022583	ENSPCIP00000038426	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	Solute carrier family 25 (mitochondrial iron transporter), member 28/37.	0.554
ABCB7	SLC25A37	ENSPCIP00000022583	ENSPCIP00000045603	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	Solute carrier family 25 (mitochondrial iron transporter), member 28/37.	0.554
ABCB8	ABCB7	ENSPCIP00000007254	ENSPCIP00000022583	ATP-binding cassette sub-family B member 8, mitochondrial.	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	0.719
ABCB8	CCDC51	ENSPCIP00000007254	ENSPCIP00000012734	ATP-binding cassette sub-family B member 8, mitochondrial.	Coiled-coil domain-containing protein 51 isoform X1.	0.617
ABCB8	CDH12	ENSPCIP00000007254	ENSPCIP00000034831	ATP-binding cassette sub-family B member 8, mitochondrial.	Cadherin 12, type 2, N-cadherin 2.	0.425
ABCB8	FECH	ENSPCIP00000007254	ENSPCIP00000027007	ATP-binding cassette sub-family B member 8, mitochondrial.	Protoporphyrin/coproporphyrin ferrochelatase.	0.430
ABCB8	KATNAL2	ENSPCIP00000007254	ENSPCIP00000008056	ATP-binding cassette sub-family B member 8, mitochondrial.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.496
ABCB8	KCNJ1	ENSPCIP00000007254	ENSPCIP00000040308	ATP-binding cassette sub-family B member 8, mitochondrial.	Potassium inwardly-rectifying channel subfamily J member 1.	0.437
ABCB8	MCU	ENSPCIP00000007254	ENSPCIP00000043400	ATP-binding cassette sub-family B member 8, mitochondrial.	Calcium uniporter protein, mitochondrial isoform X1.	0.405
ABCB8	SLC25A28	ENSPCIP00000007254	ENSPCIP00000038426	ATP-binding cassette sub-family B member 8, mitochondrial.	Solute carrier family 25 (mitochondrial iron transporter), member 28/37.	0.468
ABCB8	SLC25A37	ENSPCIP00000007254	ENSPCIP00000045603	ATP-binding cassette sub-family B member 8, mitochondrial.	Solute carrier family 25 (mitochondrial iron transporter), member 28/37.	0.402
ABCB8	TDG	ENSPCIP00000007254	ENSPCIP00000030617	ATP-binding cassette sub-family B member 8, mitochondrial.	G/T mismatch-specific thymine DNA glycosylase isoform X1.	0.506
CCDC51	ABCB8	ENSPCIP00000012734	ENSPCIP00000007254	Coiled-coil domain-containing protein 51 isoform X1.	ATP-binding cassette sub-family B member 8, mitochondrial.	0.617
CDH12	ABCB8	ENSPCIP00000034831	ENSPCIP00000007254	Cadherin 12, type 2, N-cadherin 2.	ATP-binding cassette sub-family B member 8, mitochondrial.	0.425
CDH12	TDG	ENSPCIP00000034831	ENSPCIP00000030617	Cadherin 12, type 2, N-cadherin 2.	G/T mismatch-specific thymine DNA glycosylase isoform X1.	0.461
FECH	ABCB7	ENSPCIP00000027007	ENSPCIP00000022583	Protoporphyrin/coproporphyrin ferrochelatase.	ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.	0.697
FECH	ABCB8	ENSPCIP00000027007	ENSPCIP00000007254	Protoporphyrin/coproporphyrin ferrochelatase.	ATP-binding cassette sub-family B member 8, mitochondrial.	0.430
FECH	SLC25A28	ENSPCIP00000027007	ENSPCIP00000038426	Protoporphyrin/coproporphyrin ferrochelatase.	Solute carrier family 25 (mitochondrial iron transporter), member 28/37.	0.492