STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCIP00000009506ATP-dependent RNA helicase DDX19B isoform X1. (443 aa)    
Predicted Functional Partners:
ENSPCIP00000051336
ATP-dependent RNA helicase DDX19B-like.
  
  
 
0.900
NUP214
Nucleoporin 214.
    
 
 0.872
GLE1
Nucleoporin GLE1.
    
 
 0.863
MIF4GD
MIF4G domain-containing protein.
    
   0.629
CTIF
CBP80/20-dependent translation initiation factor isoform X1.
    
 
 0.597
XPO1
Exportin-1.
    
 
 0.525
NUP88
Nucleoporin 88.
   
 
 0.480
NXF1
Nuclear RNA export factor 1.
    
 
 0.463
ENSPCIP00000042550
annotation not available
    
 
 0.463
ENSPCIP00000050180
annotation not available
    
 
 0.463
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.