STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD1Patched domain-containing protein 1. (888 aa)    
Predicted Functional Partners:
DLG4
Disks large homolog 4 isoform X1.
    
 
 0.703
VPS26B
Vacuolar protein sorting-associated protein 26B.
    
 
 0.594
SHANK2
LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 2.
      
 0.584
DLGAP2
Disks large-associated protein 2 isoform X1.
   
  
 0.580
DLG3
Discs large MAGUK scaffold protein 3.
    
 
 0.562
SNX27
Sorting nexin-27 isoform X1.
    
 
 0.547
NLGN3
LOW QUALITY PROTEIN: neuroligin-3.
      
 0.546
DISP3
LOW QUALITY PROTEIN: protein dispatched homolog 3.
   
  
 0.524
FICD
Adenosine monophosphate-protein transferase FICD.
      
 0.521
RIPK4
Receptor-interacting serine/threonine-protein kinase 4.
    
 
 0.509
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.