STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSMD1CUB and sushi domain-containing protein 1. (3288 aa)    
Predicted Functional Partners:
UMPS
Uridine 5'-monophosphate synthase.
    
 
 0.514
PDE1A
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1.
      
 0.512
BMPR1B
Bone morphogenetic protein receptor type-1B isoform X1.
    
 0.462
TNR
Tenascin-R isoform X1.
    
  0.460
TNN
Tenascin N.
    
  0.460
TNC
Tenascin C.
    
  0.460
ENSPCIP00000046415
annotation not available
    
  0.460
ENSPCIP00000047266
annotation not available
    
  0.460
SH2D4A
SH2 domain containing 4A.
      
 0.456
CBS
Cystathionine beta-synthase isoform X1.
      
 0.432
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.