Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHRF1PHD and RING finger domain-containing protein 1 isoform X1. (1683 aa)    
Predicted Functional Partners:
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 
 0.576
JMJD6
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform X1.
    
 
 0.560
TAOK3
Thousand and one amino acid protein kinase.
   
  
 0.558
SPPL3
Signal peptide peptidase-like 3 isoform X1.
      
 0.551
SMG5
Protein SMG5 isoform X1.
   
    0.543
GTF3C1
LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 1.
   
  
 0.541
TMEM98
Transmembrane protein 98.
      
 0.539
POLR2G
DNA-directed RNA polymerase II subunit RPB7.
    
   0.535
APIP
Methylthioribulose-1-phosphate dehydratase isoform X1.
      
 0.532
CSNK2A2
Casein kinase II subunit alpha' isoform X1.
   
   0.518
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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