STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SART1LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 1. (796 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
   
 0.993
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
   
 0.986
PRPF31
U4/U6 small nuclear ribonucleoprotein PRP31.
   
 0.985
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.982
PRPF4
pre-mRNA processing factor 4.
   
 0.980
DDX23
Probable ATP-dependent RNA helicase DDX23.
   
 0.980
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.977
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.965
RBM42
RNA-binding protein 42 isoform X1.
   
 0.957
LSM2
U6 snRNA-associated Sm-like protein LSm2.
    
 0.957
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.