Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BANF1Barrier-to-autointegration factor. (89 aa)    
Predicted Functional Partners:
EMD
Emerin.
    
 0.989
VRK1
Serine/threonine-protein kinase VRK1 isoform X1.
    
 0.918
LMNA
Lamin A/C.
    
 0.917
TMPO
Thymopoietin.
    
 0.909
VRK2
Serine/threonine-protein kinase VRK2 isoform X1.
    
 0.817
LEMD3
LEM domain containing 3.
    
 0.812
LEMD2
LEM domain-containing protein 2.
    
 0.795
ANKLE2
Ankyrin repeat and LEM domain-containing protein 2 isoform X1.
    
 0.769
LMNB1
Lamin-B1.
    
 0.762
LMNB2
Lamin-B2.
    
 0.762
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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