Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
RAB1BRAB1B, member RAS oncogene family. (233 aa)    
Predicted Functional Partners:
USO1
General vesicular transport factor p115 isoform X1.
   
 0.933
STX5
Syntaxin 5.
   
 0.906
RAB1A
Ras-related protein Rab-1A isoform X1.
  
  
 
0.901
GBF1
Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1.
    
 0.880
TRAPPC8
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.869
RABGGTB
Geranylgeranyl transferase type-2 subunit beta.
    
 0.868
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 0.865
ENSPCIP00000036202
annotation not available
    
 0.865
BET1
Blocked early in transport 1.
    
 0.856
TBC1D20
TBC1 domain family member 20 isoform X1.
    
 0.854
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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