Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIF1AProtein transport protein YIF1. (293 aa)    
Predicted Functional Partners:
RABAC1
Prenylated Rab acceptor protein 1.
   
 
 0.856
YIPF4
Protein YIPF4 isoform X1.
   
 
 0.711
YIPF7
Yip1 domain family member 7.
   
 
 0.703
YIPF5
Protein YIPF5 isoform X1.
   
 
 0.703
SELENOS
Selenoprotein S isoform X1.
   
 
 0.663
MAEA
Macrophage erythroblast attacher isoform X1.
   
 
 0.654
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 
 0.581
RAB1B
RAB1B, member RAS oncogene family.
   
 
 0.576
RAB1A
Ras-related protein Rab-1A isoform X1.
   
 
 0.576
DERL1
Derlin-1.
   
   0.571
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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