STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC27Tetratricopeptide repeat protein 27 isoform X1. (843 aa)    
Predicted Functional Partners:
WDR3
U3 small nucleolar RNA-associated protein 12.
   
  
 0.851
PWP2
Periodic tryptophan protein 2 homolog.
   
    0.846
WDR36
LOW QUALITY PROTEIN: WD repeat-containing protein 36.
   
    0.837
NAT10
RNA cytidine acetyltransferase isoform X1.
   
    0.827
TBL3
U3 small nucleolar RNA-associated protein 13.
   
  
 0.817
HEATR1
U3 small nucleolar RNA-associated protein 10.
   
    0.786
POLR1B
DNA-directed RNA polymerase I subunit RPA2 isoform X1.
   
    0.785
POLR3B
DNA-directed RNA polymerase III subunit RPC2 isoform X1.
   
    0.780
RRP12
Ribosomal RNA-processing protein 12.
   
    0.750
UTP18
U3 small nucleolar RNA-associated protein 18 homolog isoform X1.
   
    0.735
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.