STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO7LOW QUALITY PROTEIN: LIM domain only protein 7. (1409 aa)    
Predicted Functional Partners:
AFDN
Afadin isoform X1.
    
 0.951
ACTN1
Alpha-actinin-1 isoform X1.
    
 0.911
ACTN4
Alpha-actinin-4 isoform X1.
    
 0.911
COMMD6
COMM domain-containing protein 6 isoform X1.
     
 0.736
EMD
Emerin.
    
 
 0.717
FBXO47
F-box only protein 47 isoform X1.
      
 0.562
UBA3
NEDD8-activating enzyme E1 catalytic subunit isoform X1.
   
 
 0.553
COMMD8
COMM domain-containing protein 8.
    
  0.536
CUL1
Cullin 1.
     
 0.464
NEDD8
Ubiquitin-like protein Nedd8.
   
 
 0.448
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.