STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR4LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR4. (5184 aa)    
Predicted Functional Partners:
KCMF1
E3 ubiquitin-protein ligase KCMF1.
    
 
 0.946
ENSPCIP00000015060
annotation not available
   
 
 0.813
DYNC1H1
Cytoplasmic dynein 1 heavy chain 1 isoform X1.
   
  
 0.790
UBR2
E3 ubiquitin-protein ligase UBR2 isoform X1.
   
  
 0.769
UBR1
E3 ubiquitin-protein ligase UBR1 isoform X1.
   
  
 0.762
ABHD10
Mycophenolic acid acyl-glucuronide esterase, mitochondrial isoform X1.
    
   0.759
EMC1
ER membrane protein complex subunit 1 isoform X1.
 
    
 0.736
UBXN7
UBX domain-containing protein 7.
   
   0.699
SARS2
Serine--tRNA ligase, mitochondrial isoform X1.
    
   0.691
ENSPCIP00000020392
annotation not available
   
 
 0.635
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.