Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (914 aa)    
Predicted Functional Partners:
RBM25
RNA-binding protein 25 isoform X1.
   
 0.994
ALYREF
THO complex subunit 4.
   
 0.983
SRRM3
LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 3.
   
 0.963
SRRM2
LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 2.
   
 0.963
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.955
ENSPCIP00000021240
annotation not available
   
 0.949
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
 0.949
SRSF11
Serine/arginine-rich splicing factor 11 isoform X1.
   
 0.944
ENSPCIP00000026135
annotation not available
    
 0.940
UPF3B
Regulator of nonsense transcripts 3B.
    
 0.940
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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