Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4CSemaphorin-4C. (832 aa)    
Predicted Functional Partners:
PLXNB2
LOW QUALITY PROTEIN: plexin-B2.
    
0.911
PLXNB3
LOW QUALITY PROTEIN: plexin-B3.
    
0.837
PLXNB1
Plexin B1.
    
 0.837
SEMA4B
Semaphorin-4B.
    
 
 0.731
PLXND1
Plexin-D1.
    
 0.717
RRAS
LOW QUALITY PROTEIN: ras-related protein R-Ras.
    
 0.628
NRP1
Neuropilin-1 isoform X1.
    
 0.604
CHST10
Carbohydrate sulfotransferase 10 isoform X1.
      
 0.541
FAM229B
Protein FAM229B.
      
 0.490
CNGA3
Cyclic nucleotide-gated cation channel alpha-3 isoform X1.
      
 0.484
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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