Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX56Probable ATP-dependent RNA helicase DDX56 isoform X1. (552 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.979
WDR74
Ribosome biogenesis protein NSA1.
   
 
 0.976
CEBPZ
CCAAT/enhancer-binding protein zeta.
   
 
 0.975
NOP58
Nucleolar protein 58.
  
 
 0.974
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.973
RBM28
RNA-binding protein 28 isoform X1.
   
 0.968
DDX24
ATP-dependent RNA helicase DDX24 isoform X1.
  
 
0.967
GTPBP4
Nucleolar GTP-binding protein 1 isoform X1.
   
 
 0.965
NOC2L
Nucleolar complex protein 2 homolog isoform X1.
   
 
 0.963
PES1
Pescadillo homolog.
   
 0.963
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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