Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRSerine racemase. (340 aa)    
Predicted Functional Partners:
CBS
Cystathionine beta-synthase isoform X1.
  
 
0.950
SHMT1
LOW QUALITY PROTEIN: serine hydroxymethyltransferase, cytosolic.
     
 0.947
SHMT2
Serine hydroxymethyltransferase, mitochondrial.
     
 0.947
SDSL
L-serine/L-threonine ammonia-lyase.
  
  
0.939
SDS
L-serine dehydratase/L-threonine deaminase isoform X1.
  
  
0.938
PSPH
Phosphoserine phosphatase.
    
 0.936
ENSPCIP00000000004
Uncharacterized protein LOC110221504 isoform X1.
  
  
0.923
AGXT
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
 
 0.923
DAO
D-amino-acid oxidase.
   
 
 0.838
SPTLC2
Serine palmitoyltransferase 2.
    
 0.815
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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