Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RFX4Transcription factor RFX4 isoform X1. (735 aa)    
Predicted Functional Partners:
PKNOX2
Homeobox protein PKNOX2 isoform X1.
      
 0.546
MNX1
Motor neuron and pancreas homeobox protein 1.
      
 0.546
TBX20
T-box transcription factor TBX20.
   
  
 0.517
RFXAP
LOW QUALITY PROTEIN: regulatory factor X-associated protein.
    
 
 0.504
IFT172
Intraflagellar transport protein 172 homolog isoform X1.
    
 
 0.490
ATR
LOW QUALITY PROTEIN: serine/threonine-protein kinase ATR.
    
 
 0.489
MAB21L3
Protein mab-21-like 3.
      
 0.486
TTLL6
Tubulin polyglutamylase TTLL6/13.
      
 0.477
ENSPCIP00000043517
Tubulin polyglutamylase TTLL13P-like isoform X1.
      
 0.477
GGPS1
Geranylgeranyl pyrophosphate synthase isoform X1.
      
 0.473
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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