STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (369 aa)    
Predicted Functional Partners:
FAM8A1
Protein FAM8A1.
    
 
 0.646
OGFOD1
Prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase.
      
 0.627
MARCHF4
E3 ubiquitin-protein ligase MARCH4/9/11.
      
 0.616
TMUB1
Transmembrane and ubiquitin-like domain-containing protein 1.
      
 0.585
SYVN1
Synoviolin 1.
   
 
 0.572
AMFR
E3 ubiquitin-protein ligase AMFR isoform X1.
   
 
 0.572
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2 isoform X1.
      
 0.554
DNAJB9
DnaJ homolog subfamily B member 9.
   
  
 0.549
ERLIN1
Erlin-1 isoform X1.
      
 0.540
SEL1L
Protein sel-1 homolog 1 isoform X1.
   
 
 0.522
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.