STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (369 aa)    
Predicted Functional Partners:
FAM8A1
Protein FAM8A1.
    
 
 0.581
OGFOD1
Prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase.
      
 0.559
MARCHF4
E3 ubiquitin-protein ligase MARCH4/9/11.
      
 0.556
ATF4
Cyclic AMP-dependent transcription factor ATF-4.
   
 
 0.519
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2 isoform X1.
      
 0.474
EDEM1
LOW QUALITY PROTEIN: ER degradation-enhancing alpha-mannosidase-like protein 1.
      
 0.461
SYVN1
Synoviolin 1.
   
 
 0.451
AMFR
E3 ubiquitin-protein ligase AMFR isoform X1.
   
 
 0.451
MBTPS2
Membrane-bound transcription factor site-2 protease isoform X1.
      
 0.416
C7orf26
Uncharacterized protein C7orf26 homolog.
      
 0.406
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.