Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TREX2Three prime repair exonuclease 2. (238 aa)    
Predicted Functional Partners:
PAN3
poly(A) specific ribonuclease subunit PAN3.
    
 0.558
PCNA
Proliferating cell nuclear antigen.
   
 0.535
VAT1L
Synaptic vesicle membrane protein VAT-1 homolog-like.
    
 
 0.498
SAMHD1
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1.
   
 
 0.491
RPA3
Replication protein A 14 kDa subunit.
    
   0.472
RNASEH2A
Ribonuclease H2 subunit A.
      
 0.472
GMPS
GMP synthase (glutamine-hydrolysing).
   
 
 0.445
ADAR
Double-stranded RNA-specific adenosine deaminase isoform X1.
   
  
 0.437
RFC5
Replication factor C subunit 3/5.
    
 
 0.433
RFC2
Replication factor C subunit 2/4.
    
 
 0.427
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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