STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMYD1Histone-lysine N-methyltransferase SMYD1 isoform X1. (519 aa)    
Predicted Functional Partners:
TP53
Cellular tumor antigen p53.
   
 0.809
CAMKMT
LOW QUALITY PROTEIN: calmodulin-lysine N-methyltransferase.
     
 0.683
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
   
 0.678
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 isoform X1.
   
 0.678
PLOD1
LOW QUALITY PROTEIN: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.678
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1.
    
 0.626
RBBP5
Retinoblastoma-binding protein 5 isoform X1.
    
 0.605
EED
Embryonic ectoderm development.
   
 0.604
MPHOSPH8
M-phase phosphoprotein 8.
    
 0.571
ZNF367
Zinc finger protein 367.
   
 0.560
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.