Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPSF3Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (674 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
0.999
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1 isoform X1.
   
 0.999
CPSF1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.998
WDR33
LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33.
   
 0.998
SYMPK
Symplekin isoform X1.
   
 0.998
CPSF4L
Putative cleavage and polyadenylation specificity factor subunit 4-like protein.
   
 0.993
CPSF4
Cleavage and polyadenylation specificity factor subunit 4 isoform X1.
   
 0.993
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.992
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 0.990
CSTF2
Cleavage stimulation factor subunit 2 isoform X1.
   
 0.987
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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