STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3BMicrotubule-associated proteins 1A/1B light chain 3B. (118 aa)    
Predicted Functional Partners:
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.992
SQSTM1
Sequestosome-1 isoform X1.
   
 0.988
ATG7
Ubiquitin-like modifier-activating enzyme ATG7 isoform X1.
   
 0.983
ATG3
Ubiquitin-like-conjugating enzyme ATG3.
   
 0.983
ATG5
Autophagy protein 5 isoform X1.
    
 0.977
FUNDC1
FUN14 domain-containing protein 1.
    
 0.976
ENSPCIP00000017577
annotation not available
   
 0.975
OPTN
Optineurin isoform X1.
   
 0.966
ATG16L1
Autophagy-related protein 16-1 isoform X1.
    
 0.962
BECN1
Beclin-1.
   
 0.959
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.