STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCMF1E3 ubiquitin-protein ligase KCMF1. (382 aa)    
Predicted Functional Partners:
UBR4
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR4.
    
 
 0.938
THSD7A
Thrombospondin type-1 domain-containing protein 7A isoform X1.
      
 0.644
PPM1A
Protein phosphatase 1A isoform X1.
   
    0.569
CUL3
Cullin 3.
   
  
 0.445
UBE3C
Ubiquitin-protein ligase E3C isoform X1.
   
  
 0.431
UBR1
E3 ubiquitin-protein ligase UBR1 isoform X1.
      
 0.418
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.