Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KCMF1E3 ubiquitin-protein ligase KCMF1. (382 aa)    
Predicted Functional Partners:
UBR4
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR4.
    
 
 0.946
ABHD10
Mycophenolic acid acyl-glucuronide esterase, mitochondrial isoform X1.
    
   0.823
SARS2
Serine--tRNA ligase, mitochondrial isoform X1.
    
   0.808
ANKRD9
Ankyrin repeat domain-containing protein 9.
    
 
 0.758
THSD7A
Thrombospondin type-1 domain-containing protein 7A isoform X1.
      
 0.686
FBXO11
F-box only protein 11 isoform X1.
      
 0.646
SH3RF2
Putative E3 ubiquitin-protein ligase SH3RF2 isoform X1.
      
 0.632
UHRF2
Ubiquitin like with PHD and ring finger domains 2.
      
 0.620
PPM1A
Protein phosphatase 1A isoform X1.
   
    0.602
ISCU
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial.
      
 0.572
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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