Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDCBP2Syntenin-2 isoform X1. (305 aa)    
Predicted Functional Partners:
CD63
CD63 antigen.
   
 0.901
PDCD6IP
Programmed cell death 6-interacting protein.
    
 0.847
RYR1
Ryanodine receptor 1.
   
   0.816
CD81
CD81 antigen.
    
 0.808
LYAR
Cell growth-regulating nucleolar protein.
    
   0.774
NFASC
Neurofascin.
     
 0.767
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
  0.708
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X1.
    
   0.697
QARS1
LOW QUALITY PROTEIN: glutamine--tRNA ligase.
    
   0.697
LARS1
LOW QUALITY PROTEIN: leucine--tRNA ligase, cytoplasmic.
    
   0.697
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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