STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC38Tetratricopeptide repeat protein 38 isoform X1. (500 aa)    
Predicted Functional Partners:
TRMU
LOW QUALITY PROTEIN: mitochondrial tRNA-specific 2-thiouridylase 1.
 
    
 0.637
FAM118A
Protein FAM118A isoform X1.
      
 0.562
MANSC4
MANSC domain-containing protein 4 isoform X1.
      
 0.552
LRIT1
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.
      
 0.550
LRIT2
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.
      
 0.549
KIAA1958
Uncharacterized protein KIAA1958 homolog isoform X1.
      
 0.495
ZCCHC17
Nucleolar protein of 40 kDa isoform X1.
      
 0.461
DDX28
DEAD-box helicase 28.
      
 0.461
CLIP3
LOW QUALITY PROTEIN: CAP-Gly domain-containing linker protein 3.
      
 0.454
MYO18A
Unconventional myosin-XVIIIa isoform X1.
      
 0.408
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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