TTC38 protein (Phascolarctos cinereus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TTC38

Tetratricopeptide repeat protein 38 isoform X1. (500 aa)

Predicted Functional Partners:

TRMU

0.650

FAM118A

0.633

MANSC4

0.573

CLIP3

0.550

KIAA1958

0.546

DDX28

0.546

ZCCHC17

0.523

LRIT1

0.523

LRIT2

0.518

HDHD2

0.500

Your Current Organism:

Phascolarctos cinereus

NCBI taxonomy Id: 38626
Other names: P. cinereus, koala

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLIP3	TTC38	ENSPCIP00000020306	ENSPCIP00000012486	LOW QUALITY PROTEIN: CAP-Gly domain-containing linker protein 3.	Tetratricopeptide repeat protein 38 isoform X1.	0.550
DDX28	LRIT1	ENSPCIP00000053526	ENSPCIP00000021500	DEAD-box helicase 28.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.595
DDX28	LRIT2	ENSPCIP00000053526	ENSPCIP00000046471	DEAD-box helicase 28.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	0.559
DDX28	MANSC4	ENSPCIP00000053526	ENSPCIP00000044806	DEAD-box helicase 28.	MANSC domain-containing protein 4 isoform X1.	0.624
DDX28	TTC38	ENSPCIP00000053526	ENSPCIP00000012486	DEAD-box helicase 28.	Tetratricopeptide repeat protein 38 isoform X1.	0.546
DDX28	ZCCHC17	ENSPCIP00000053526	ENSPCIP00000018481	DEAD-box helicase 28.	Nucleolar protein of 40 kDa isoform X1.	0.480
FAM118A	TRMU	ENSPCIP00000016098	ENSPCIP00000047367	Protein FAM118A isoform X1.	LOW QUALITY PROTEIN: mitochondrial tRNA-specific 2-thiouridylase 1.	0.573
FAM118A	TTC38	ENSPCIP00000016098	ENSPCIP00000012486	Protein FAM118A isoform X1.	Tetratricopeptide repeat protein 38 isoform X1.	0.633
HDHD2	TTC38	ENSPCIP00000008050	ENSPCIP00000012486	Haloacid dehalogenase-like hydrolase domain-containing protein 2.	Tetratricopeptide repeat protein 38 isoform X1.	0.500
KIAA1958	TTC38	ENSPCIP00000042860	ENSPCIP00000012486	Uncharacterized protein KIAA1958 homolog isoform X1.	Tetratricopeptide repeat protein 38 isoform X1.	0.546
LRIT1	DDX28	ENSPCIP00000021500	ENSPCIP00000053526	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	DEAD-box helicase 28.	0.595
LRIT1	LRIT2	ENSPCIP00000021500	ENSPCIP00000046471	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	0.760
LRIT1	MANSC4	ENSPCIP00000021500	ENSPCIP00000044806	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	MANSC domain-containing protein 4 isoform X1.	0.639
LRIT1	TTC38	ENSPCIP00000021500	ENSPCIP00000012486	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	Tetratricopeptide repeat protein 38 isoform X1.	0.523
LRIT2	DDX28	ENSPCIP00000046471	ENSPCIP00000053526	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	DEAD-box helicase 28.	0.559
LRIT2	LRIT1	ENSPCIP00000046471	ENSPCIP00000021500	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.760
LRIT2	MANSC4	ENSPCIP00000046471	ENSPCIP00000044806	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	MANSC domain-containing protein 4 isoform X1.	0.586
LRIT2	TTC38	ENSPCIP00000046471	ENSPCIP00000012486	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.	Tetratricopeptide repeat protein 38 isoform X1.	0.518
MANSC4	DDX28	ENSPCIP00000044806	ENSPCIP00000053526	MANSC domain-containing protein 4 isoform X1.	DEAD-box helicase 28.	0.624
MANSC4	LRIT1	ENSPCIP00000044806	ENSPCIP00000021500	MANSC domain-containing protein 4 isoform X1.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.639