Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
UBE3BLOW QUALITY PROTEIN: ubiquitin-protein ligase E3B. (1070 aa)    
Predicted Functional Partners:
RCC1L
RCC1 like.
   
  
 0.639
SDE2
Protein SDE2 homolog.
      
 0.568
DLK1
Protein delta homolog 1.
    
   0.553
PUDP
Pseudouridine 5'-phosphatase.
      
 0.552
ZRANB1
Ubiquitin thioesterase ZRANB1 isoform X1.
      
 0.551
TRPV4
LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 4.
      
 0.515
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
      
 0.510
NDUFAF7
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7.
      
 0.507
GART
Trifunctional purine biosynthetic protein adenosine-3.
      
 0.505
UBA5
Ubiquitin-like modifier-activating enzyme 5 isoform X1.
     
 0.481
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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