Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHX2LIM/homeobox protein Lhx2 isoform X1. (409 aa)    
Predicted Functional Partners:
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.808
LDB2
LIM domain-binding protein 2 isoform X1.
    
 0.709
NFATC1
Nuclear factor of activated T cells 1.
      
 0.627
DLX3
Homeobox protein DLX-3.
     
 0.623
LMO1
Rhombotin-1 isoform X1.
   
 
 0.612
LMO3
LIM domain only protein 3 isoform X1.
   
 
 0.612
HOXC13
Homeobox protein HoxA/C/D13.
    
 
 0.594
KHK
Ketohexokinase.
    
   0.588
GATA5
Transcription factor GATA-5 isoform X1.
    
 0.588
FOXN1
Forkhead box protein N1.
   
 0.577
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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