STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF20E3 ubiquitin-protein ligase BRE1A. (1005 aa)    
Predicted Functional Partners:
RNF40
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase BRE1B.
  
0.999
WAC
WW domain-containing adapter protein with coiled-coil isoform X1.
   
 0.975
CDC73
Parafibromin.
   
 0.937
LEO1
RNA polymerase-associated protein LEO1.
   
 0.852
ENSPCIP00000020392
annotation not available
    
 0.845
UBE2B
Ubiquitin-conjugating enzyme E2 B isoform X1.
    
 0.845
UBE2A
Ubiquitin-conjugating enzyme E2 A.
    
 0.845
TP53
Cellular tumor antigen p53.
    
 
 0.844
FAM98A
LOW QUALITY PROTEIN: protein FAM98A.
    
   0.818
CTR9
RNA polymerase-associated protein CTR9 homolog.
   
 0.782
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.