SNX9 protein (Phascolarctos cinereus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SNX9

LOW QUALITY PROTEIN: sorting nexin-9. (560 aa)

Predicted Functional Partners:

SNX33

0.973

SNX18

0.972

SYNJ1

0.950

PIK3C2A

0.949

PIK3C2B

0.945

PIK3CA

0.912

DNM3

0.912

PIK3CB

0.906

PIK3CD

0.906

PIK3CG

0.903

Your Current Organism:

Phascolarctos cinereus

NCBI taxonomy Id: 38626
Other names: P. cinereus, koala

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNM3	SNX18	ENSPCIP00000041039	ENSPCIP00000026495	Dynamin-3 isoform X1.	Sorting nexin-9/18/33.	0.558
DNM3	SNX33	ENSPCIP00000041039	ENSPCIP00000009625	Dynamin-3 isoform X1.	Sorting nexin-9/18/33.	0.558
DNM3	SNX9	ENSPCIP00000041039	ENSPCIP00000012792	Dynamin-3 isoform X1.	LOW QUALITY PROTEIN: sorting nexin-9.	0.912
PIK3C2A	PIK3C2B	ENSPCIP00000017856	ENSPCIP00000022980	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	0.943
PIK3C2A	PIK3CA	ENSPCIP00000017856	ENSPCIP00000008142	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.713
PIK3C2A	PIK3CB	ENSPCIP00000017856	ENSPCIP00000007695	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1.	0.704
PIK3C2A	PIK3CD	ENSPCIP00000017856	ENSPCIP00000024504	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.699
PIK3C2A	PIK3CG	ENSPCIP00000017856	ENSPCIP00000005165	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform.	0.700
PIK3C2A	SNX18	ENSPCIP00000017856	ENSPCIP00000026495	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Sorting nexin-9/18/33.	0.949
PIK3C2A	SNX33	ENSPCIP00000017856	ENSPCIP00000009625	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Sorting nexin-9/18/33.	0.949
PIK3C2A	SNX9	ENSPCIP00000017856	ENSPCIP00000012792	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	LOW QUALITY PROTEIN: sorting nexin-9.	0.949
PIK3C2A	SYNJ1	ENSPCIP00000017856	ENSPCIP00000021579	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	Synaptojanin-1 isoform X1.	0.907
PIK3C2B	PIK3C2A	ENSPCIP00000022980	ENSPCIP00000017856	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha isoform X1.	0.943
PIK3C2B	PIK3CA	ENSPCIP00000022980	ENSPCIP00000008142	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.710
PIK3C2B	PIK3CB	ENSPCIP00000022980	ENSPCIP00000007695	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1.	0.706
PIK3C2B	PIK3CD	ENSPCIP00000022980	ENSPCIP00000024504	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.695
PIK3C2B	PIK3CG	ENSPCIP00000022980	ENSPCIP00000005165	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform.	0.701
PIK3C2B	SNX18	ENSPCIP00000022980	ENSPCIP00000026495	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Sorting nexin-9/18/33.	0.945
PIK3C2B	SNX33	ENSPCIP00000022980	ENSPCIP00000009625	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	Sorting nexin-9/18/33.	0.945
PIK3C2B	SNX9	ENSPCIP00000022980	ENSPCIP00000012792	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform X1.	LOW QUALITY PROTEIN: sorting nexin-9.	0.945