STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS3TRNA pseudouridine(38/39) synthase isoform X1. (476 aa)    
Predicted Functional Partners:
PUS7
LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog.
   
 
 0.837
MRPL17
39S ribosomal protein L17, mitochondrial.
  
  
 0.829
TRUB1
LOW QUALITY PROTEIN: probable tRNA pseudouridine synthase 1.
   
 0.806
WDR4
TRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1.
   
 
 0.801
TRUB2
TruB pseudouridine synthase family member 2.
   
 0.764
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.752
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.752
RPUSD4
RNA pseudouridylate synthase domain-containing protein 4.
 
  
 0.738
NOC2L
Nucleolar complex protein 2 homolog isoform X1.
   
    0.728
SEC63
Translocation protein SEC63 homolog.
      
 0.724
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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