Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPS27AUbiquitin-small subunit ribosomal protein S27Ae. (156 aa)    
Predicted Functional Partners:
SQSTM1
Sequestosome-1 isoform X1.
   
 0.990
RPS7
LOW QUALITY PROTEIN: 40S ribosomal protein S7.
   
 0.986
ENSPCIP00000043051
LOW QUALITY PROTEIN: polyubiquitin-C-like.
   
 
0.986
SMURF2
E3 ubiquitin-protein ligase SMURF2 isoform X1.
    
  0.984
RPL5
60S ribosomal protein L5 isoform X1.
   
 0.983
RPS17
Small subunit ribosomal protein S17e.
   
  0.982
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.982
RPS20
LOW QUALITY PROTEIN: 40S ribosomal protein S20.
   
 0.981
UBE2L3
Ubiquitin-conjugating enzyme E2 L3 isoform X1.
    
  0.980
ENSPCIP00000026212
annotation not available
    
 0.977
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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