STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRANK1LOW QUALITY PROTEIN: TPR and ankyrin repeat-containing protein 1. (2942 aa)    
Predicted Functional Partners:
SCAF8
Protein SCAF8 isoform X1.
   
 
 0.794
SCAF4
Splicing factor, arginine/serine-rich 15 isoform X1.
   
 
 0.794
DROSHA
Ribonuclease 3 isoform X1.
   
 
 0.558
EXOSC10
Exosome complex exonuclease RRP6.
    
 
 0.552
NIPBL
LOW QUALITY PROTEIN: nipped-B-like protein.
   
    0.552
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
  
 0.542
RNASEH2A
Ribonuclease H2 subunit A.
   
 
 0.526
ENSPCIP00000019750
annotation not available
    
 
 0.507
SUPT5H
LOW QUALITY PROTEIN: transcription elongation factor SPT5.
    
 
 0.507
MTREX
Superkiller viralicidic activity 2-like 2.
   
  
 0.491
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.