STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VLDLRVery low-density lipoprotein receptor isoform X1. (1062 aa)    
Predicted Functional Partners:
RELN
Reelin isoform X1.
    
 0.998
DAB1
Disabled homolog 1 isoform X1.
    
 0.990
PCSK9
LOW QUALITY PROTEIN: proprotein convertase subtilisin/kexin type 9.
    
 0.898
APOE
Apolipoprotein E.
    
 0.758
SH3KBP1
SH3 domain-containing kinase-binding protein 1 isoform X1.
     
 0.701
ITSN2
Intersectin-2.
    
 0.684
AGRN
Agrin isoform X1.
   
 0.678
LDLRAP1
Low density lipoprotein receptor adapter protein 1 isoform X1.
    
 0.668
APOB
Apolipoprotein B-100 isoform X1.
    
 0.638
LRP8
LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 8.
  
 
 
0.617
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.