Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSX2Visual system homeobox 2. (370 aa)    
Predicted Functional Partners:
ATOH7
Protein atonal homolog 7.
      
 0.780
RCVRN
Recoverin.
   
  
 0.606
BHLHE23
Class B basic helix-loop-helix protein 4/5.
   
 
 0.582
FOXN4
Forkhead box protein N4.
      
 0.556
NXNL1
Nucleoredoxin-like protein 1.
   
  
 0.551
RHO
Rhodopsin.
      
 0.546
USP12
Ubiquitin carboxyl-terminal hydrolase 12 isoform X1.
    
   0.546
USP46
Ubiquitin carboxyl-terminal hydrolase 46 isoform X1.
    
   0.546
GAP43
Neuromodulin.
      
 0.546
GLUL
Glutamine synthetase isoform X1.
      
 0.544
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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